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Web based integrated software platform offering single point of access to information and tools
Get integrated data and tools for data management, analysis and visualization all in one software accessible online.
Supports all the latest versions of Mac, Windows and Linux |
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Integrated data
KEGG global metabolic maps and KEGG pathways ( including metabolic, organismal, cellular processes and disease pathways).
Molecular annotations from Uniprot, Enzyme data and Gene ontology.
Supports several identifiers for protein, gene and small molecules collated from from IPI, Uniprot, KEGG, PIR, Chebi and other databases. |
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User data management and comparison
Easily import experimental data.
Supports several identifiers for complete recognition and mapping of user data.
Manage experimental (sets of observations) data by creating logical groups.
Copy and move records across groups.
Use SET operation tools for finding Intersections, differences and union of two lists. |
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Powerful visualization
Overlay multidimensional experimental data on pathway diagrams
Customize overlay settings to suite your data
 Visualize multiple data types simultaneously using shapes, fill color, symbols
Visualize multidimensional data using embedded charts and heat maps overlaid on pathway diagram |
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Analysis and reports
Implements several pathway analysis algorithm including Binomial proportion test, Fisher's exact test and Parametric Analysis of Gene-set Enrichment (PAGE).
Allows filter and customize pathway sets used in analysis in particular context
Compare analysis results in tabular, chart representations
Generate comprehensive customized publication quality reports in PDF, HTML and Excel formats |
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Meticulously designed GUI
Designed after "all in one screen" concept. Get accesses to tools, contextual data and reports being in one screen
Easily browse pathways and its components
Enabled with simple and advanced search functionality. Search uses Apache Lucene technology allows Boolean, fuzzy, range and field searches
Search and filter capability is enabled for every grid displaying data
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Downloads in standard and convenient formats
Dowload KEGG Pathways as SBML, BioPAX, SIF, XGMML, CSV and Tab-delimited (gene sets).
Allows individual pathway, batch and bulk download
Download pathways, gene list, annotations, analysis reports
Pathway diagram can be downloaded as interactive SVG, PDF and in other graphic formats like PNG and JPG.
The downloads can be complete pathway diagram or zoomed in region of the pathway.
Downloaded diagrams can also include overlays and annotations added by users.
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Mind mapping and peer to peer collaboration capability
Use this tool as thinking aid(mind mapping tool).
Pick a symbols closely representing your concept from the library of readily available symbols while working with a pathway(s), thus assisting you in hypothesis generation or designing experiments.
Use tools and add custom annotation (text, shapes and symbols) for a pathway
Export the annotations as BioPAX; then email to your collaborators who could import that file which recreates the exact annotation that you made over the pathways.
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Browser compatibility
Supports most of the widely used browsers like IE 9.0, IE 8.0, Firefox, Chrome, Safari, Opera.
Uses Scalable vector graphics (SVG) and Ajax for presentation of data, which has built in support by most of the modern browsers listed above
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KEGG XML (KGML) Converter
Supports conversion of KGML format to several standard and convenient formats.
Formats currently supported are SBML, CellDesigner, BioPax, SIF, XGMML, SVG and Txt.
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